5OXJ Transferase date Sep 06, 2017
title Crystal Structure Of Klentaq Mutant M747k In A Closed Ternar With A O6-Meg:Benzitp Base Pair
authors K.Betz, K.Diederichs, A.Marx
compound source
Molecule: Dna Polymerase I, Thermostable
Chain: A
Synonym: Taq Polymerase 1
Ec: 2.7.7.7
Engineered: Yes
Mutation: Yes
Other_details: Mutant M747k
Organism_scientific: Thermus Aquaticus
Organism_taxid: 271
Gene: Pola, Pol1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna Primer
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna Template
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 31 2 1
R_factor 0.196 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.347 109.347 90.636 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand 6OG, ACT, DDG, MG, MN, NZI enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for the selective incorporation of an artificial nucleotide opposite a DNA adduct by a DNA polymerase., Betz K, Nilforoushan A, Wyss LA, Diederichs K, Sturla SJ, Marx A, Chem Commun (Camb). 2017 Nov 23;53(94):12704-12707. doi: 10.1039/c7cc07173f. PMID:29136072
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (209 Kb) [Save to disk]
  • Biological Unit Coordinates (5oxj.pdb1.gz) 201 Kb
  • LPC: Ligand-Protein Contacts for 5OXJ
  • CSU: Contacts of Structural Units for 5OXJ
  • Structure Factors (1106 Kb)
  • Retrieve 5OXJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OXJ from S2C, [Save to disk]
  • View 5OXJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OXJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5oxj_B] [5oxj_C] [5oxj_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OXJ
  • Community annotation for 5OXJ at PDBWiki (http://pdbwiki.org)

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