5OYA Lyase date Sep 08, 2017
title Unusual Posttranslational Modifications Revealed In Crystal Of Diatom Rubisco.
authors K.Valegard, I.Andersson
compound source
Molecule: Rubisco Large Subunit
Chain: A, B, D, E, F, G, H
Organism_scientific: Chaetoceros Socialis
Organism_taxid: 163503

Molecule: Rubisco Large Subunit
Chain: C

Organism_scientific: Chaetoceros Socialis
Organism_taxid: 163503

Molecule: Rubisco Small Subunit
Chain: I, J, K, L, M, N, O, P

Organism_scientific: Chaetoceros Socialis
Organism_taxid: 163503
symmetry Space Group: C 1 2 1
R_factor 0.167 R_Free 0.192
crystal
cell
length a length b length c angle alpha angle beta angle gamma
118.170 219.110 220.230 90.00 90.19 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand CAP, CSO, EDO, HL2, HYP, KCX, LOH, M3L, MG, SNC enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, E, C, A, B, H, D, G


N, K, M, L, J, O, P, I


Primary referenceStructural and functional analyses of Rubisco from arctic diatom species reveal unusual posttranslational modifications., Valegard K, Andralojc PJ, Haslam RP, Pearce FG, Eriksen GK, Madgwick PJ, Kristoffersen AK, van Lun M, Klein U, Eilertsen HC, Parry MAJ, Andersson I, J Biol Chem. 2018 Jun 20. pii: RA118.003518. doi: 10.1074/jbc.RA118.003518. PMID:29925588
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1595 Kb) [Save to disk]
  • Biological Unit Coordinates (5oya.pdb1.gz) 1579 Kb
  • Biological Unit Coordinates (5oya.pdb2.gz) 1581 Kb
  • LPC: Ligand-Protein Contacts for 5OYA
  • CSU: Contacts of Structural Units for 5OYA
  • Structure Factors (4300 Kb)
  • Retrieve 5OYA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OYA from S2C, [Save to disk]
  • View 5OYA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OYA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5oya_P] [5oya_E] [5oya_D] [5oya_A] [5oya_H] [5oya_B] [5oya_K] [5oya_M] [5oya_C] [5oya_O] [5oya_I] [5oya_N] [5oya_L] [5oya_G] [5oya_F] [5oya_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OYA
  • Community annotation for 5OYA at PDBWiki (http://pdbwiki.org)

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