5PD8		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	EDO	enzyme
Primary reference	A multi-crystal method for extracting obscured crystallographic states from conventionally uninterpretable electron density., Pearce NM, Krojer T, Bradley AR, Collins P, Nowak RP, Talon R, Marsden BD, Kelm S, Shi J, Deane CM, von Delft F, Nat Commun. 2017 Apr 24;8:15123. doi: 10.1038/ncomms15123. PMID:28436492

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk] Biological Unit Coordinates (5pd8.pdb1.gz) 23 Kb LPC: Ligand-Protein Contacts for 5PD8 CSU: Contacts of Structural Units for 5PD8 Structure Factors (1005 Kb) Retrieve 5PD8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5PD8 from S2C, [Save to disk] Re-refined 5pd8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5PD8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5pd8] [5pd8_A] SWISS-PROT database:

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