5PTP Serine Protease date Mar 31, 1997
title Structure Of Hydrolase (Serine Proteinase)
authors R.M.Stroud, J.Finer-Moore
compound source
Molecule: Beta Trypsin
Chain: A
Ec: 3.4.21.4
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
symmetry Space Group: P 21 21 21
R_factor 0.152 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.840 58.610 67.470 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.34 Å
ligand CA, MIS enzyme Hydrolase E.C.3.4.21.4 BRENDA
note 5PTP supersedes 4PTP, 3PTP, 2PTP, 1PTP
related structures by homologous chain: 1O3D, 1P2J
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolvent structure in crystals of trypsin determined by X-ray and neutron diffraction., Finer-Moore JS, Kossiakoff AA, Hurley JH, Earnest T, Stroud RM, Proteins 1992 Mar;12(3):203-22. PMID:1557349
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (5ptp.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 5PTP
  • CSU: Contacts of Structural Units for 5PTP
  • Likely Quarternary Molecular Structure file(s) for 5PTP
  • Retrieve 5PTP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5PTP from S2C, [Save to disk]
  • View 5PTP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5PTP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 5PTP from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 5PTP, from MSDmotif at EBI
  • Genome occurence of 5PTP's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d5ptp__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ptp_A] [5ptp]
  • SWISS-PROT database: [P00760]
  • Domain organization of [TRY1_BOVIN] by SWISSPFAM
  • Domain found in 5PTP: [Tryp_SPc ] by SMART
  • Other resources with information on 5PTP
  • Community annotation for 5PTP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 5PTP from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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