5QC8 Hydrolase date Aug 17, 2017
title Crystal Structure Of Human Cathepsin-S With Bound Ligand
authors S.D.Bembenek, M.K.Ameriks, T.Mirzadegan, H.Yang, C.Shao, S.K.Burl
compound source
Molecule: Cathepsin S
Chain: A, B
Ec: 3.4.22.27
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ctss
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: C 1 2 1
R_factor 0.167 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.062 37.153 127.677 90.00 93.14 90.00
method X-Ray Diffractionresolution 1.74 Å
ligand BFV enzyme Hydrolase E.C.3.4.22.27 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (5qc8.pdb1.gz) 41 Kb
  • Biological Unit Coordinates (5qc8.pdb2.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 5QC8
  • CSU: Contacts of Structural Units for 5QC8
  • Structure Factors (1182 Kb)
  • Retrieve 5QC8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5QC8 from S2C, [Save to disk]
    • View 5QC8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5QC8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5qc8_B] [5qc8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5QC8
  • Community annotation for 5QC8 at PDBWiki (http://pdbwiki.org)

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