5QCE Hydrolase date Aug 17, 2017
title Crystal Structure Of Human Cathepsin-S With Bound Ligand
authors S.D.Bembenek, M.K.Ameriks, T.Mirzadegan, H.Yang, C.Shao, S.K.Burl
compound source
Molecule: Cathepsin S
Chain: A, B
Ec: 3.4.22.27
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ctss
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: C 1 2 1
R_factor 0.193 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.530 37.148 105.659 90.00 108.64 90.00
method X-Ray Diffractionresolution 2.78 Å
ligand BJD enzyme Hydrolase E.C.3.4.22.27 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (5qce.pdb1.gz) 37 Kb
  • Biological Unit Coordinates (5qce.pdb2.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 5QCE
  • CSU: Contacts of Structural Units for 5QCE
  • Structure Factors (315 Kb)
  • Retrieve 5QCE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5QCE from S2C, [Save to disk]
  • View 5QCE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5QCE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5qce_B] [5qce_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5QCE
  • Community annotation for 5QCE at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science