5QIX Hydrolase Hydrolase Inhibitor date Aug 10, 2018
title Covalent Fragment Group Deposition -- Crystal Structure Of O Complex With Pcm-0103007
authors R.Sethi, A.Douangamath, E.Resnick, A.R.Bradley, P.Collins, J.Bran R.Talon, T.Krojer, C.Bountra, C.H.Arrowsmith, A.Edwards, N.Londo Delft
compound source
Molecule: Ubiquitin Thioesterase Otub2
Chain: A
Synonym: Deubiquitinating Enzyme Otub2,Otu Domain-Containin Ubiquitin Aldehyde-Binding Protein 2,Otubain-2,Ubiquitin-Sp Processing Protease Otub2;
Ec: 3.4.19.12
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Otub2, C14orf137, Otb2, Otu2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.147 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.554 58.334 50.333 90.00 116.38 90.00
method X-Ray Diffractionresolution 1.39 Å
ligand EDO, J5V, UNL enzyme Hydrolase E.C.3.4.19.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (5qix.pdb1.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 5QIX
  • CSU: Contacts of Structural Units for 5QIX
  • Structure Factors (1255 Kb)
  • Retrieve 5QIX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5QIX from S2C, [Save to disk]
    • View 5QIX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5QIX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5qix_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5QIX
  • Community annotation for 5QIX at PDBWiki (http://pdbwiki.org)

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