5QR1 Transferase date May 22, 2019
title Pandda Analysis Group Deposition -- Crystal Structure Of Hum In Complex With Z396380540
authors G.A.Bezerra, W.Foster, H.Bailey, L.Shrestha, T.Krojer, R.Talon, J. Neto, A.Douangamath, B.B.Nicola, F.Von Delft, C.H.Arrowsmith, A. C.Bountra, P.E.Brennan, W.W.Yue
compound source
Molecule: 5-Aminolevulinate Synthase, Erythroid-Specific, Mitochondrial;
Chain: B, A
Synonym: Alas-E,5-Aminolevulinic Acid Synthase 2,Delta-Ala 2,Delta-Aminolevulinate Synthase 2;
Ec: 2.3.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Alas2, Alase, Asb
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: C 1 2 1
R_factor 0.210 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
125.757 108.412 75.740 90.00 109.11 90.00
method X-Ray Diffractionresolution 1.44 Å
ligand HR5, PLP enzyme Transferase E.C.2.3.1.37 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (5qr1.pdb1.gz) 137 Kb
  • LPC: Ligand-Protein Contacts for 5QR1
  • CSU: Contacts of Structural Units for 5QR1
  • Structure Factors (13408 Kb)
  • Retrieve 5QR1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5QR1 from S2C, [Save to disk]
  • View 5QR1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5QR1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5qr1_A] [5qr1_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5QR1
  • Community annotation for 5QR1 at PDBWiki (http://pdbwiki.org)

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