5R4S Rna Binding Protein date Feb 27, 2020
title Pandda Analysis Group Deposition -- Crystal Structure Of Hum Cleavage Factor Im In Complex With En08775-45
authors S.L.Kidd, N.Mateu, R.Talon, T.Krojer, A.Aimon, A.R.Bradley, M.Fair L.Diaz-Saez, H.F.Sore, A.Madin, K.V.M.Huber, F.Von Delft, D.R.Sp
compound source
Molecule: Cleavage And Polyadenylation Specificity Factor S
Chain: A, B
Synonym: Cleavage And Polyadenylation Specificity Factor 25 Subunit,Cpsf 25 Kda Subunit,Cleavage Factor Im Complex 25 K Subunit,Cfim25,Nucleoside Diphosphate-Linked Moiety X Motif Motif 21,Nudix Hydrolase 21,Pre-Mrna Cleavage Factor Im 68 Subunit;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nudt21, Cfim25, Cpsf25, Cpsf5
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32 2 1
R_factor 0.209 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.910 58.910 212.330 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.61 Å
ligand ACT, RWD, ZN enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (5r4s.pdb1.gz) 37 Kb
  • Biological Unit Coordinates (5r4s.pdb2.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 5R4S
  • CSU: Contacts of Structural Units for 5R4S
  • Structure Factors (8360 Kb)
  • Retrieve 5R4S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5R4S from S2C, [Save to disk]
    • View 5R4S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5R4S
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5r4s_A] [5r4s_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5R4S
  • Community annotation for 5R4S at PDBWiki (http://pdbwiki.org)

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