5RB4 Oxidoreductase Oxidoreductase Inhibitor date Mar 16, 2020
title Pandda Analysis Group Deposition -- Crystal Structure Of Jmj Complex With Fm001677a
authors M.Snee, R.Nowak, C.Johansson, N.A.Burgess-Brown, C.H.Arrowsmith, C.Bountra, A.M.Edwards, U.Oppermann
compound source
Molecule: Lysine-Specific Demethylase 3b
Chain: A, B
Synonym: Jmjc Domain-Containing Histone Demethylation Prote Jumonji Domain-Containing Protein 1b,Nuclear Protein 5qnca;
Ec: 1.14.11.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kdm3b, C5orf7, Jhdm2b, Jmjd1b, Kiaa1082
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.185 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.870 93.660 93.692 90.00 107.88 90.00
method X-Ray Diffractionresolution 1.55 Å
ligand A6Z, CL, MN enzyme Oxidoreductase E.C.1.14.11 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (134 Kb) [Save to disk]
  • Biological Unit Coordinates (5rb4.pdb1.gz) 66 Kb
  • Biological Unit Coordinates (5rb4.pdb2.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 5RB4
  • CSU: Contacts of Structural Units for 5RB4
  • Structure Factors (7520 Kb)
  • Retrieve 5RB4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5RB4 from S2C, [Save to disk]
    • View 5RB4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5RB4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5rb4_A] [5rb4_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5RB4
  • Community annotation for 5RB4 at PDBWiki (http://pdbwiki.org)

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