5RL4 Hydrolase Hydrolase Inhibitor date Aug 05, 2020
title Pandda Analysis Group Deposition Of Computational Designs Of Main Protease Covalent Inhibitors -- Crystal Structure Of Main Protease In Complex With Lon-Wei-Adc59df6-3 (Mpro-X3
authors D.Fearon, C.D.Owen, A.Douangamath, P.Lukacik, A.J.Powell, C.M.Str Damerell, D.Zaidman, T.Krojer, P.Gehrtz, C.Wild, A.Aimon, J.Brand A.Carbery, L.Dunnett, T.J.Gorrie-Stone, R.Skyner, N.London, M.A. F.Von Delft
compound source
Molecule: 3c-Like Proteinase
Chain: A
Ec: 3.4.22.69
Engineered: Yes
Organism_scientific: Severe Acute Respiratory Syndrome Coro 2;
Organism_common: 2019-Ncov
Organism_taxid: 2697049
Gene: Rep, 1a-1b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.180 R_Free 0.205
crystal
cell
length a length b length c angle alpha angle beta angle gamma
112.251 52.644 44.300 90.00 102.84 90.00
method X-Ray Diffractionresolution 1.53 Å
ligand DMS, VEV enzyme Hydrolase E.C.3.4.22.69 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (5rl4.pdb1.gz) 200 Kb
  • LPC: Ligand-Protein Contacts for 5RL4
  • CSU: Contacts of Structural Units for 5RL4
  • Structure Factors (1904 Kb)
  • Retrieve 5RL4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5RL4 from S2C, [Save to disk]
  • View 5RL4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5RL4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5rl4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5RL4
  • Community annotation for 5RL4 at PDBWiki (http://pdbwiki.org)

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