5SUY Signaling Protein date Aug 04, 2016
title Domain-Swapped Dimer Of Human Dishevelled2 Dep Domain: Monoc Crystal Form Crystallised From Dimeric Fraction
authors M.Renko, M.V.Gammons, M.Bienz
compound source
Molecule: Segment Polarity Protein Dishevelled Homolog Dvl-
Chain: A, B, C, D
Fragment: Unp Residues 416-510
Synonym: Dishevelled-2,Dsh Homolog 2
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dvl2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petm-41
symmetry Space Group: P 1 21 1
R_factor 0.185 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.671 60.174 66.128 90.00 117.62 90.00
method X-Ray Diffractionresolution 1.88 Å
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceWnt Signalosome Assembly by DEP Domain Swapping of Dishevelled., Gammons MV, Renko M, Johnson CM, Rutherford TJ, Bienz M, Mol Cell. 2016 Oct 6;64(1):92-104. doi: 10.1016/j.molcel.2016.08.026. Epub 2016, Sep 29. PMID:27692984
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk]
  • Biological Unit Coordinates (5suy.pdb1.gz) 126 Kb
  • LPC: Ligand-Protein Contacts for 5SUY
  • CSU: Contacts of Structural Units for 5SUY
  • Structure Factors (4636 Kb)
  • Retrieve 5SUY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5SUY from S2C, [Save to disk]
  • Re-refined 5suy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5SUY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5SUY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5suy] [5suy_D] [5suy_C] [5suy_A] [5suy_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5SUY: [DEP ] by SMART
    • Other resources with information on 5SUY
  • Community annotation for 5SUY at PDBWiki (http://pdbwiki.org)

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