5SY2	Hydrolase Hydrolase Inhibitor	date	Aug 10, 2016
title	Structure-Based Design Of A New Series Of N-Piperidin-3-Ylpy 5-Carboxamides As Renin Inhibitors
authors	G.P.Snell, C.A.Behnke, K.Okada, O.Hideyuki, B.C.Sang, W.Lane
compound		source
Molecule: Renin Chain: A, B Synonym: Angiotensinogenase Ec: 3.4.23.15 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ren Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293
symmetry	Space Group: P 21 3	R_factor 0.185 R_Free 0.221
crystal cell	length a length b length c angle alpha angle beta angle gamma 137.540 137.540 137.540 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.25 Å
ligand	1PE, 74V, DMS, NAG, PGE	enzyme	Hydrolase E.C.3.4.23.15 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure-based design of a new series of N-(piperidin-3-yl)pyrimidine-5-carboxamides as renin inhibitors., Imaeda Y, Tawada M, Suzuki S, Tomimoto M, Kondo M, Tarui N, Sanada T, Kanagawa R, Snell G, Behnke CA, Kubo K, Kuroita T, Bioorg Med Chem. 2016 Nov 15;24(22):5771-5780. doi: 10.1016/j.bmc.2016.09.030., Epub 2016 Sep 13. PMID:27687967

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (220 Kb) [Save to disk] Biological Unit Coordinates (5sy2.pdb1.gz) 109 Kb Biological Unit Coordinates (5sy2.pdb2.gz) 107 Kb Biological Unit Coordinates (5sy2.pdb3.gz) 635 Kb LPC: Ligand-Protein Contacts for 5SY2 CSU: Contacts of Structural Units for 5SY2 Structure Factors (692 Kb) Retrieve 5SY2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5SY2 from S2C, [Save to disk] Re-refined 5sy2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5SY2 in 3D

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Visual 3D analysis of 5SY2

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5sy2] [5sy2_B] [5sy2_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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