5SZJ	Endocytosis	date	Aug 14, 2016
title	Structure Of Human Rab10 In Complex With The Bmerb Domain Of
authors	A.Rai, A.Oprisko, J.Campos, Y.Fu, T.Friese, A.Itzen, R.S.Goody, M.P E.M.Gazdag
compound		source
Molecule: Ras-Related Protein Rab-10 Chain: A Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rab10 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Mical C-Terminal-Like Protein Chain: B Synonym: Erk2-Binding Testicular Protein 1,Ebitein-1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Micalcl Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 2	R_factor 0.224 R_Free 0.266
crystal cell	length a length b length c angle alpha angle beta angle gamma 153.680 61.870 55.570 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.66 Å
ligand	GNP, MG, PEG	enzyme
Gene Ontology	Chain Function Process Component A cadherin binding involved in... B
Primary reference	bMERB domains are bivalent Rab8 family effectors evolved by gene duplication., Rai A, Oprisko A, Campos J, Fu Y, Friese T, Itzen A, Goody RS, Gazdag EM, Muller MP, Elife. 2016 Aug 23;5. pii: e18675. doi: 10.7554/eLife.18675. PMID:27552051

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk] Biological Unit Coordinates (5szj.pdb1.gz) 111 Kb LPC: Ligand-Protein Contacts for 5SZJ CSU: Contacts of Structural Units for 5SZJ Structure Factors (134 Kb) Retrieve 5SZJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5SZJ from S2C, [Save to disk] Re-refined 5szj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5SZJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5SZJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5szj_A] [5szj] [5szj_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5SZJ: [DUF3585] [RAB ] by SMART

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