5SZL Cell Adhesion date Aug 14, 2016
title Protocadherin Gamma A1 Extracellular Cadherin Domains 1-4
authors K.M.Goodman, F.Bahna, S.Mannepalli, B.Honig, L.Shapiro
compound source
Molecule: Protocadherin Gamma A1 Extracellular Cadherin Dom Protein Pcdhga1;
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Pcdhga1
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293f
symmetry Space Group: P 31 2 1
R_factor 0.287 R_Free 0.314
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.867 107.867 463.081 90.00 90.00 120.00
method X-Ray Diffractionresolution 4.20 Å
ligand BMA, CA, FUC, MAN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referencegamma-Protocadherin structural diversity and functional implications., Goodman KM, Rubinstein R, Thu CA, Mannepalli S, Bahna F, Ahlsen G, Rittenhouse C, Maniatis T, Honig B, Shapiro L, Elife. 2016 Oct 26;5. pii: e20930. doi: 10.7554/eLife.20930. PMID:27782885
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (548 Kb) [Save to disk]
  • Biological Unit Coordinates (5szl.pdb1.gz) 265 Kb
  • Biological Unit Coordinates (5szl.pdb2.gz) 274 Kb
  • LPC: Ligand-Protein Contacts for 5SZL
  • CSU: Contacts of Structural Units for 5SZL
  • Structure Factors (326 Kb)
  • Retrieve 5SZL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5SZL from S2C, [Save to disk]
  • Re-refined 5szl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5SZL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5SZL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5szl_D] [5szl_B] [5szl_A] [5szl] [5szl_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5SZL: [CA ] by SMART
    • Other resources with information on 5SZL
  • Community annotation for 5SZL at PDBWiki (http://pdbwiki.org)

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