5T3L Dna date Aug 25, 2016
title B-Dna (Cgcgaattcgcg)2 Soaked With Selenourea For 1 Min
authors Z.Luo, Z.Dauter
compound source
Molecule: Dna (5'-D(Cpgpcpgpapaptptpcpgpcpg)-3'
Chain: A, B
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 21 21
R_factor 0.148 R_Free 0.186
crystal
cell
length a length b length c angle alpha angle beta angle gamma
24.384 41.479 65.996 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.58 Å
ligand SEY enzyme
Primary referenceSelenourea: a convenient phasing vehicle for macromolecular X-ray crystal structures., Luo Z, Sci Rep. 2016 Nov 14;6:37123. doi: 10.1038/srep37123. PMID:27841370
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (5t3l.pdb1.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 5T3L
  • CSU: Contacts of Structural Units for 5T3L
  • Structure Factors (443 Kb)
  • Retrieve 5T3L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5T3L from S2C, [Save to disk]
  • Re-refined 5t3l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5T3L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5T3L
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5t3l] [5t3l_B] [5t3l_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5T3L
  • Community annotation for 5T3L at PDBWiki (http://pdbwiki.org)

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