5T3L B-DNA (CGCGAATTCGCG)2 soaked with selenourea for 1 min date
authors Luo, Z., Dauter, Z.
compound source
symmetry
R_factor
R_Free 0.186
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.58
ligand SEY enzyme
Primary referenceSelenourea: a convenient phasing vehicle for macromolecular X-ray crystal structures., Luo Z, Sci Rep. 2016 Nov 14;6:37123. doi: 10.1038/srep37123. PMID:27841370
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (5t3l.pdb1.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 5T3L
  • CSU: Contacts of Structural Units for 5T3L
  • Structure Factors (443 Kb)
  • Retrieve 5T3L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5T3L from S2C, [Save to disk]
  • Re-refined 5t3l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5T3L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5T3L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5t3l] [5t3l_B] [5t3l_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5T3L
  • Community annotation for 5T3L at PDBWiki (http://pdbwiki.org)

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