5T6S Viral Protein date Sep 01, 2016
title Crystal Structure Of The Ashanghai22013 (H7n9) Influenza Hemagglutinin In Complex With The Antiviral Drug Arbidol
authors R.U.Kadam, I.A.Wilson
compound source
Molecule: Hemagglutinin Ha1
Chain: A, C, E, G, I, K
Engineered: Yes
Organism_scientific: Influenza A Virus
Organism_taxid: 1332244
Strain: Ashanghai022013(H7n9)
Gene: Ha
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111

Molecule: Hemagglutinin Ha2
Chain: B, D, F, H, J, L
Engineered: Yes

Organism_scientific: Influenza A Virus
Organism_taxid: 1332244
Strain: Ashanghai022013(H7n9)
Gene: Ha
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
symmetry Space Group: P 1 21 1
R_factor 0.204 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.419 231.490 127.850 90.00 96.88 90.00
method X-Ray Diffractionresolution 2.36 Å
ligand 75U, BMA, NA, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, K, E, C, I, G


F, J, B, H, D, L


Primary referenceStructural basis of influenza virus fusion inhibition by the antiviral drug Arbidol., Kadam RU, Wilson IA, Proc Natl Acad Sci U S A. 2016 Dec 21. pii: 201617020. doi:, 10.1073/pnas.1617020114. PMID:28003465
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (988 Kb) [Save to disk]
  • Biological Unit Coordinates (5t6s.pdb1.gz) 495 Kb
  • Biological Unit Coordinates (5t6s.pdb2.gz) 489 Kb
  • LPC: Ligand-Protein Contacts for 5T6S
  • CSU: Contacts of Structural Units for 5T6S
  • Structure Factors (2371 Kb)
  • Retrieve 5T6S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5T6S from S2C, [Save to disk]
  • Re-refined 5t6s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5T6S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5T6S
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5t6s_F] [5t6s_A] [5t6s_J] [5t6s_L] [5t6s_B] [5t6s_I] [5t6s] [5t6s_H] [5t6s_K] [5t6s_G] [5t6s_D] [5t6s_C] [5t6s_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5T6S
  • Community annotation for 5T6S at PDBWiki (http://pdbwiki.org)

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