5TAR Oncoprotein date Sep 10, 2016
title Crystal Structure Of Farnesylated And Methylated Kras4b In C With Pde-Delta (Crystal Form II - With Ordered Hypervariabl
authors S.Dharmaiah, T.H.Tran, D.K.Simanshu
compound source
Molecule: Gtpase Kras
Chain: A
Synonym: K-Ras 2,Ki-Ras,C-K-Ras,C-Ki-Ras
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kras, Kras2, Rask2
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469

Molecule: Retinal Rod Rhodopsin-Sensitive Cgmp 3',5'-Cyclic Phosphodiesterase Subunit Delta;
Chain: B
Synonym: Gmp-Pde Delta,Protein P17
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pde6d, Pded
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.223 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.140 70.495 84.684 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CMT, EDO, FAR, GDP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • GTPase inhibitor activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (5tar.pdb1.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 5TAR
  • CSU: Contacts of Structural Units for 5TAR
  • Structure Factors (370 Kb)
  • Retrieve 5TAR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TAR from S2C, [Save to disk]
  • Re-refined 5tar structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5TAR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5TAR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tar] [5tar_B] [5tar_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5TAR: [RAS ] by SMART
    • Other resources with information on 5TAR
  • Community annotation for 5TAR at PDBWiki (http://pdbwiki.org)

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