5TBM Transcription date Sep 12, 2016
title Crystal Structure Of Pt2385 Bound To Hif2a-B:Arnt-B Comple
authors X.Du
compound source
Molecule: Endothelial Pas Domain-Containing Protein 1
Chain: A
Fragment: Unp Residues 237-248
Synonym: Epas-1,Basic-Helix-Loop-Helix-Pas Protein Mop2,Cla Helix-Loop-Helix Protein 73,Bhlhe73,Hif-1-Alpha-Like Factor Hypoxia-Inducible Factor 2-Alpha,Hif2-Alpha,Member Of Pas P Pas Domain-Containing Protein 2;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Epas1, Bhlhe73, Hif2a, Mop2, Pasd2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Aryl Hydrocarbon Receptor Nuclear Translocator
Chain: B
Fragment: Unp Residues 340-453
Synonym: Arnt Protein,Class E Basic Helix-Loop-Helix Protei Bhlhe2,Dioxin Receptor,Nuclear Translocator,Hypoxia-Inducib 1-Beta,Hif1-Beta;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arnt, Bhlhe2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.238 R_Free 0.300
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.400 84.097 41.401 90.00 106.24 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand 79A enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (5tbm.pdb1.gz) 37 Kb
  • Biological Unit Coordinates (5tbm.pdb2.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 5TBM
  • CSU: Contacts of Structural Units for 5TBM
  • Structure Factors (693 Kb)
  • Retrieve 5TBM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TBM from S2C, [Save to disk]
  • Re-refined 5tbm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5TBM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5TBM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tbm] [5tbm_A] [5tbm_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5TBM: [PAC] [PAS ] by SMART
    • Other resources with information on 5TBM
  • Community annotation for 5TBM at PDBWiki (http://pdbwiki.org)

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