5TBY Contractile Protein date Sep 13, 2016
title Human Beta Cardiac Heavy Meromyosin Interacting-Heads Motif By Homology Modeling (Using Swiss-Model) Of Human Sequence Aphonopelma Homology Model (Pdb-3jbh), Rigidly Fitted To Hu Cardiac Negatively Stained Thick Filament 3d-Reconstruction 2240)
authors L.Alamo, J.S.Ware, A.Pinto, R.E.Gillilan, J.G.Seidman, C.E.Seidma R.Padron
compound source
Molecule: Myosin-7
Chain: A, B
Fragment: Subfragment 1(S1)
Synonym: Myosin Heavy Chain 7,Myosin Heavy Chain Slow Isofo Slow,Myosin Heavy Chain,Cardiac Muscle Beta Isoform,Myhc-Be
Other_details: Myosin 2 Heavy Chain, Ventricular Cardiac Mu Head Homology Model Of Human Beta Cardiac Heavy Meromyosin Interacting-Heads Motif;
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Myosin Light Chain 3
Chain: C, D
Synonym: Cardiac Myosin Light Chain 1,Cmlc1,Myosin Light Ch Slow-Twitch Muscle Bventricular Isoform,Mlc1sb,Ventricular Alkali Light Chain,Ventricular Myosin Light Chain 1,Vlcl, Ventricularslow Twitch Myosin Alkali Light Chain,Mlc-Lvsb
Other_details: Myosin 2 Essential Light Chain, Ventricular Muscle, Free (Chain C) And Blocked (Chain D) Head Homology Human Beta Cardiac Heavy Meromyosin Interacting-Heads Motif
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Myosin Regulatory Light Chain 2, Ventricularcard Isoform;
Chain: E, F
Synonym: Mlc-2v,Cardiac Myosin Light Chain 2,Myosin Light C Slow Skeletalventricular Muscle Isoform,Mlc-2sv,Ventricul Light Chain 2;
Other_details: Myosin 2 Regulatory Light Chain, Ventricular Muscle, Free (Chain E) And Blocked (Chain F) Head Homology Human Beta Cardiac Heavy Meromyosin Interacting-Heads Motif
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 20.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C


F, E


Primary referenceEffects of myosin variants on interacting-heads motif explain distinct hypertrophic and dilated cardiomyopathy phenotypes., Alamo L, Ware JS, Pinto A, Gillilan RE, Seidman JG, Seidman CE, Padron R, Elife. 2017 Jun 13;6. pii: e24634. doi: 10.7554/eLife.24634. PMID:28606303
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (388 Kb) [Save to disk]
  • Biological Unit Coordinates (5tby.pdb1.gz) 370 Kb
  • CSU: Contacts of Structural Units for 5TBY
  • Retrieve 5TBY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TBY from S2C, [Save to disk]
    • View 5TBY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5TBY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tby_F] [5tby_A] [5tby_B] [5tby_E] [5tby_C] [5tby_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5TBY
  • Community annotation for 5TBY at PDBWiki (http://pdbwiki.org)

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