5TH7 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 7BY, EDO, UNX enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, A


Primary referenceStructure-Based Design of a Covalent Inhibitor of the SET Domain-Containing Protein 8 (SETD8) Lysine Methyltransferase., Butler KV, Ma A, Yu W, Li F, Tempel W, Babault N, Pittella-Silva F, Shao J, Wang J, Luo M, Vedadi M, Brown PJ, Arrowsmith CH, Jin J, J Med Chem. 2016 Nov 10;59(21):9881-9889. doi: 10.1021/acs.jmedchem.6b01244. Epub, 2016 Nov 2. PMID:27804297
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (5th7.pdb1.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 5TH7
  • CSU: Contacts of Structural Units for 5TH7
  • Structure Factors (1989 Kb)
  • Retrieve 5TH7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TH7 from S2C, [Save to disk]
  • Re-refined 5th7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5TH7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5th7] [5th7_A] [5th7_B]
  • SWISS-PROT database:
  • Domain found in 5TH7: [SET ] by SMART

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