OCA Atlas for 5THO

5THO

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

7C7

enzyme

Gene

MRA ; MRA

Gene
Ontology

Chain	Function	Process	Component
T, O, E, G, U, S, C, B, Q, F, D, R, A, P
b, K, M, V, a, X, Z, H, I, N, J, W, Y, L

Primary reference

Structural Basis for the Species-Selective Binding of N,C-Capped Dipeptides to the Mycobacterium tuberculosis Proteasome., Hsu HC, Singh PK, Fan H, Wang R, Sukenick G, Nathan C, Lin G, Li H, Biochemistry. 2017 Jan 10;56(1):324-333. doi: 10.1021/acs.biochem.6b01107. Epub, 2016 Dec 27. PMID:27976853

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (944 Kb) [Save to disk]

Biological Unit Coordinates (5tho.pdb1.gz) 932 Kb

LPC: Ligand-Protein Contacts for 5THO

CSU: Contacts of Structural Units for 5THO

Structure Factors (4784 Kb)

Retrieve 5THO in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5THO from S2C, [Save to disk]

Re-refined 5tho structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5THO in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5tho] [5tho_A] [5tho_B] [5tho_C] [5tho_D] [5tho_E] [5tho_F] [5tho_G] [5tho_H] [5tho_I] [5tho_J] [5tho_K] [5tho_L] [5tho_M] [5tho_N] [5tho_O] [5tho_P] [5tho_Q] [5tho_R] [5tho_S] [5tho_T] [5tho_U] [5tho_V] [5tho_W] [5tho_X] [5tho_Y] [5tho_Z] [5tho_a] [5tho_b]

SWISS-PROT database:

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