5THY date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand GDS, MSE, SAH enzyme
Gene LYNGBM3L
Primary referenceDomain Organization and Active Site Architecture of a Polyketide Synthase C-methyltransferase., Skiba MA, Sikkema AP, Fiers WD, Gerwick WH, Sherman DH, Aldrich CC, Smith JL, ACS Chem Biol. 2016 Oct 10. PMID:27723289
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (253 Kb) [Save to disk]
  • Biological Unit Coordinates (5thy.pdb1.gz) 126 Kb
  • Biological Unit Coordinates (5thy.pdb2.gz) 123 Kb
  • LPC: Ligand-Protein Contacts for 5THY
  • CSU: Contacts of Structural Units for 5THY
  • Structure Factors (730 Kb)
  • Retrieve 5THY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5THY from S2C, [Save to disk]
  • Re-refined 5thy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5THY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5thy] [5thy_A] [5thy_B]
  • SWISS-PROT database:

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