5TIU Transferase Transferase Inhibitor date Oct 03, 2016
title Crystal Structure Of Syk Kinase Domain With Inhibitor
authors J.M.Ellis, M.D.Altman, B.Cash, A.M.Haidle, R.L.Kubiak, M.L.Maddes A.B.Northrup
compound source
Molecule: Tyrosine-Protein Kinase Syk
Chain: A
Fragment: Unp Residues 356-635
Synonym: Spleen Tyrosine Kinase,P72-Syk
Ec: 2.7.10.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Syk
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Other_details: Gateway (Invitrogen) Adapted Pcdna6 Attb His
symmetry Space Group: P 21 21 21
R_factor 0.185 R_Free 0.203
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.770 85.470 89.440 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.49 Å
ligand 7CU enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (5tiu.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 5TIU
  • CSU: Contacts of Structural Units for 5TIU
  • Structure Factors (1404 Kb)
  • Retrieve 5TIU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TIU from S2C, [Save to disk]
  • Re-refined 5tiu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5TIU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TIU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tiu_A] [5tiu]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5TIU
  • Community annotation for 5TIU at PDBWiki (http://pdbwiki.org)

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