5TJB Transport Protein date Oct 04, 2016
title I-II Linker Of Trpml1 Channel At Ph 4.5
authors M.Li, W.K.Zhang, N.M.Benvin, X.Zhou, D.Su, H.Li, S.Wang, I.E.Michai L.Tong, X.Li, J.Yang
compound source
Molecule: Mucolipin-1
Chain: A
Fragment: Unp Residues (84-296)
Synonym: Mg-2,Mucolipidin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mcoln1, Ml4, Mstp080
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: De3
Expression_system_variant: Rosetta-Gami 2
Expression_system_plasmid: Pet26b
symmetry Space Group: P 4 21 2
R_factor 0.212 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.353 94.353 50.715 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis of dual Ca2+/pH regulation of the endolysosomal TRPML1 channel., Li M, Zhang WK, Benvin NM, Zhou X, Su D, Li H, Wang S, Michailidis IE, Tong L, Li X, Yang J, Nat Struct Mol Biol. 2017 Mar;24(3):205-213. doi: 10.1038/nsmb.3362. Epub 2017, Jan 23. PMID:28112729
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (5tjb.pdb1.gz) 110 Kb
  • CSU: Contacts of Structural Units for 5TJB
  • Structure Factors (136 Kb)
  • Retrieve 5TJB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TJB from S2C, [Save to disk]
  • Re-refined 5tjb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5TJB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TJB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5tjb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tjb] [5tjb_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5TJB
  • Community annotation for 5TJB at PDBWiki (http://pdbwiki.org)

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