5TL6	Signaling Protein Hydrolase	date	Oct 10, 2016
title	Crystal Structure Of Sars-Cov Papain-Like Protease In Comple C-Terminal Domain Of Human Isg15
authors	J.V.Dzimianski, C.M.Daczkowski, S.D.Pegan
compound		source
Molecule: Replicase Polyprotein 1ab Chain: B, D Fragment: Unp Residues 1541-1855 Synonym: Pp1ab,Orf1ab Polyprotein Ec: 3.4.19.12,3.4.22.69,3.4.22.-,2.7.7.48,3.6.4.12,3.6.4.13 3.1.13.-,3.1.-.-; Engineered: Yes		Organism_scientific: Human Sars Coronavirus Organism_common: Sars-Cov Organism_taxid: 227859 Gene: Rep, 1a-1b Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008
Molecule: Ubiquitin-Like Protein Isg15 Chain: C, A Fragment: C-Terminal Domain (Unp Residues 80-157) Synonym: Interferon-Induced 15 Kda Protein,Interferon-Induc Protein,Ip17,Ubiquitin Cross-Reactive Protein,Hucrp; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Isg15, G1p2, Ucrp Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008
symmetry	Space Group: P 21 21 21	R_factor 0.191 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 46.881 86.988 221.532 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.62 Å
ligand	AYE, SO4, ZN	enzyme	Hydrolase E.C.3.4.19.12 BRENDA
Gene Ontology	Chain Function Process Component D, B
Primary reference	Structural insights into the interaction of coronavirus papain-like proteases and interferon-stimulated gene product 15 from different species., Daczkowski CM, Dzimianski JV, Clasman JR, Goodwin O, Mesecar AD, Pegan SD, J Mol Biol. 2017 Apr 21. pii: S0022-2836(17)30187-0. doi:, 10.1016/j.jmb.2017.04.011. PMID:28438633

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk] Biological Unit Coordinates (5tl6.pdb1.gz) 65 Kb Biological Unit Coordinates (5tl6.pdb2.gz) 64 Kb LPC: Ligand-Protein Contacts for 5TL6 CSU: Contacts of Structural Units for 5TL6 Structure Factors (804 Kb) Retrieve 5TL6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5TL6 from S2C, [Save to disk] Re-refined 5tl6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5TL6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5TL6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5tl6_C] [5tl6_B] [5tl6] [5tl6_A] [5tl6_D] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5TL6

Community annotation for 5TL6 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---