5TOL Hydrolase date Oct 18, 2016
title Crystal Structure Of Beta-Site App-Cleaving Enzyme 1 Complex (3-((4as,7as)-2-Amino-4,4a,5,6-Tetrahydro-7ah-Furo[2,3-D][1 3]Thiazin-7a-Yl)-4-Fluorophenyl)-5-Bromo-2-Pyridinecarboxam
authors J.K.Muckelbauer
compound source
Molecule: Beta-Secretase 1
Chain: A
Fragment: Kinase Domain
Synonym: Aspartyl Protease 2,Asp 2,Beta-Site Amyloid Precur Protein Cleaving Enzyme 1,Beta-Site App Cleaving Enzyme 1,M Membrane-Associated Aspartic Protease 2;
Ec: 3.4.23.46
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bace1, Bace, Kiaa1149
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 61 2 2
R_factor 0.201 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.490 101.490 171.237 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.51 Å
ligand 7H3 enzyme Hydrolase E.C.3.4.23.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of furo[2,3-d][1,3]thiazinamines as beta amyloid cleaving enzyme-1 (BACE1) inhibitors., Wu YJ, Guernon J, Rajamani R, Toyn JH, Ahlijanian MK, Albright CF, Muckelbauer J, Chang C, Camac D, Macor JE, Thompson LA, Bioorg Med Chem Lett. 2016 Dec 1;26(23):5729-5731. doi:, 10.1016/j.bmcl.2016.10.055. Epub 2016 Oct 20. PMID:27816517
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (5tol.pdb1.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 5TOL
  • CSU: Contacts of Structural Units for 5TOL
  • Structure Factors (1231 Kb)
  • Retrieve 5TOL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TOL from S2C, [Save to disk]
  • Re-refined 5tol structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5TOL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TOL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tol_A] [5tol]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5TOL
  • Community annotation for 5TOL at PDBWiki (http://pdbwiki.org)

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