OCA Atlas for 5TRY

5TRY

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

7J0

enzyme

Gene

MRA ; MRA

Gene
Ontology

Chain	Function	Process	Component
F, U, B, S, E, C, D, R, A, T, O, G, Q, P
H, I, X, W, b, M, L, V, Y, a, N, Z, K, J

Primary reference

Structural Basis for the Species-Selective Binding of N,C-Capped Dipeptides to the Mycobacterium tuberculosis Proteasome., Hsu HC, Singh PK, Fan H, Wang R, Sukenick G, Nathan C, Lin G, Li H, Biochemistry. 2017 Jan 10;56(1):324-333. doi: 10.1021/acs.biochem.6b01107. Epub, 2016 Dec 27. PMID:27976853

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (949 Kb) [Save to disk]

Biological Unit Coordinates (5try.pdb1.gz) 934 Kb

LPC: Ligand-Protein Contacts for 5TRY

CSU: Contacts of Structural Units for 5TRY

Structure Factors (3090 Kb)

Retrieve 5TRY in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5TRY from S2C, [Save to disk]

Re-refined 5try structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5TRY in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5try] [5try_A] [5try_B] [5try_C] [5try_D] [5try_E] [5try_F] [5try_G] [5try_H] [5try_I] [5try_J] [5try_K] [5try_L] [5try_M] [5try_N] [5try_O] [5try_P] [5try_Q] [5try_R] [5try_S] [5try_T] [5try_U] [5try_V] [5try_W] [5try_X] [5try_Y] [5try_Z] [5try_a] [5try_b]

SWISS-PROT database:

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