5TVB Transferase date Nov 08, 2016
title Structure Of The Tpr Oligomerization Domain
authors K.Pal, Q.Xu, X.E.Zhou, K.Melcher, H.E.Xu
compound source
Molecule: Nucleoprotein Tpr
Chain: A, B
Fragment: Residues 2-142
Synonym: Megator,Npc-Associated Intranuclear Protein,Transl Promoter Region Protein;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tpr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.242 R_Free 0.303
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.355 50.669 94.656 90.00 108.01 90.00
method X-Ray Diffractionresolution 2.75 Å
ligand MSE enzyme
Primary referenceStructural Basis of TPR-Mediated Oligomerization and Activation of Oncogenic Fusion Kinases., Pal K, Bandyopadhyay A, Zhou XE, Xu Q, Marciano DP, Brunzelle JS, Yerrum S, Griffin PR, Vande Woude G, Melcher K, Xu HE, Structure. 2017 Jun 6;25(6):867-877.e3. doi: 10.1016/j.str.2017.04.015. Epub 2017, May 18. PMID:28528776
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (5tvb.pdb1.gz) 95 Kb
  • LPC: Ligand-Protein Contacts for 5TVB
  • CSU: Contacts of Structural Units for 5TVB
  • Structure Factors (146 Kb)
  • Retrieve 5TVB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TVB from S2C, [Save to disk]
    • View 5TVB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5TVB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tvb_A] [5tvb_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5TVB
  • Community annotation for 5TVB at PDBWiki (http://pdbwiki.org)

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