5TXH Polymorphic form 2 of amyloid-beta derived peptide - IFAEDV date
authors Sangwan, S., Sawaya, M.R., Eisenberg, D.
compound source
symmetry
R_factor
R_Free 0.1384
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.45
ligand IPA enzyme
Primary referenceDistal amyloid beta-protein fragments template amyloid assembly., Do TD, Sangwan S, de Almeida NEC, Ilitchev AI, Giammona M, Sawaya MR, Buratto SK, Eisenberg DS, Bowers MT, Protein Sci. 2018 Jul;27(7):1181-1190. doi: 10.1002/pro.3375. Epub 2018 Feb 16. PMID:29349888
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (8 Kb) [Save to disk]
  • Biological Unit Coordinates (5txh.pdb1.gz) 6 Kb
  • LPC: Ligand-Protein Contacts for 5TXH
  • CSU: Contacts of Structural Units for 5TXH
  • Structure Factors (80 Kb)
  • Retrieve 5TXH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TXH from S2C, [Save to disk]
  • View 5TXH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TXH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5txh_D] [5txh_B] [5txh_A] [5txh_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5TXH
  • Community annotation for 5TXH at PDBWiki (http://pdbwiki.org)

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