5TYB	DNA Polymerase Mu Reactant Complex, 10mM Mg2+ (7.5 min)	date
authors	Jamsen, J.A., Wilson, S.H.
compound		source
symmetry		R_factor R_Free 0.1988
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.85
ligand	CA, DTT, EDO, EPE, MG, NA, PPV, TTP	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Time-lapse crystallography snapshots of a double-strand break repair polymerase in action., Jamsen JA, Beard WA, Pedersen LC, Shock DD, Moon AF, Krahn JM, Bebenek K, Kunkel TA, Wilson SH, Nat Commun. 2017 Aug 15;8(1):253. doi: 10.1038/s41467-017-00271-7. PMID:28811466

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk] Biological Unit Coordinates (5tyb.pdb1.gz) 74 Kb LPC: Ligand-Protein Contacts for 5TYB CSU: Contacts of Structural Units for 5TYB Structure Factors (997 Kb) Retrieve 5TYB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5TYB from S2C, [Save to disk]

View 5TYB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5TYB

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute Fold representative 5tyb from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5tyb_P] [5tyb_T] [5tyb_D] [5tyb_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5TYB

Community annotation for 5TYB at PDBWiki (http://pdbwiki.org)

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