5TYF DNA Polymerase Mu Product Complex, 10 mM Mg2+ (270 min) date
authors Jamsen, J.A., Wilson, S.H.
compound source
symmetry
R_factor
R_Free 0.2050
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.97
ligand DTT, EDO, EPE, GOA, MG, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceTime-lapse crystallography snapshots of a double-strand break repair polymerase in action., Jamsen JA, Beard WA, Pedersen LC, Shock DD, Moon AF, Krahn JM, Bebenek K, Kunkel TA, Wilson SH, Nat Commun. 2017 Aug 15;8(1):253. doi: 10.1038/s41467-017-00271-7. PMID:28811466
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk]
  • Biological Unit Coordinates (5tyf.pdb1.gz) 144 Kb
  • LPC: Ligand-Protein Contacts for 5TYF
  • CSU: Contacts of Structural Units for 5TYF
  • Structure Factors (828 Kb)
  • Retrieve 5TYF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TYF from S2C, [Save to disk]
  • View 5TYF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5TYF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5tyf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tyf_A] [5tyf_D] [5tyf_T] [5tyf_P]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5TYF
  • Community annotation for 5TYF at PDBWiki (http://pdbwiki.org)

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