5TZU	Immune System	date	Nov 22, 2016
title	Crystal Structure Of Human Cd47 Ecd Bound To Fab Of B6h12.2
authors	R.M.F.Cardoso
compound		source
Molecule: Light Chain Of Fab B6h12.2 Chain: L Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293
Molecule: Heavy Chain Of Fab B6h12.2 Chain: H Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293
Molecule: Leukocyte Surface Antigen Cd47 Chain: C Fragment: Extracellular Domain, Unp Residues 19-141 Synonym: Antigenic Surface Determinant Protein Oa3,Integrin Associated Protein,Iap,Protein Mer6; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cd47, Mer6 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293(Gnti-)
symmetry	Space Group: C 1 2 1	R_factor 0.177 R_Free 0.213
crystal cell	length a length b length c angle alpha angle beta angle gamma 161.763 54.527 83.494 90.00 95.89 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	ACT, BMA, GOL, MAN, NAG, SO4	enzyme
Primary reference	Anti-leukemic activity and tolerability of anti-human CD47 monoclonal antibodies., Pietsch EC, Dong J, Cardoso R, Zhang X, Chin D, Hawkins R, Dinh T, Zhou M, Strake B, Feng PH, Rocca M, Santos CD, Shan X, Danet-Desnoyers G, Shi F, Kaiser E, Millar HJ, Fenton S, Swanson R, Nemeth JA, Attar RM, Blood Cancer J. 2017 Feb 24;7(2):e536. doi: 10.1038/bcj.2017.7. PMID:28234345

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (185 Kb) [Save to disk] Biological Unit Coordinates (5tzu.pdb1.gz) 176 Kb LPC: Ligand-Protein Contacts for 5TZU CSU: Contacts of Structural Units for 5TZU Structure Factors (965 Kb) Retrieve 5TZU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5TZU from S2C, [Save to disk] Re-refined 5tzu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5TZU in 3D

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Visual 3D analysis of 5TZU

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5tzu_C] [5tzu] [5tzu_H] [5tzu_L] SWISS-PROT database: Domain organization of by SWISSPFAM

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