5U00	Hydrolase Hydrolase Inhibitor	date	Nov 22, 2016
title	Crystal Structure Of Human Phosphodiesterase 2a In Complex W Difluoro-1-[(4-Fluoro-3-Iodophenyl)Carbonyl]-5-{5-Methyl-[1 4]Triazolo[1,5-A]Pyrimidin-7-Yl}Piperidine
authors	R.Xu, K.Aertgeerts
compound		source
Molecule: Cgmp-Dependent 3',5'-Cyclic Phosphodiesterase Chain: A, B, C, D Fragment: Catalytic Domain, Unp Residues 323-663 Synonym: Cyclic Gmp-Stimulated Phosphodiesterase,Cgspde Ec: 3.1.4.17 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pde2a Expression_system: Trichoplusia Ni Expression_system_taxid: 7111 Expression_system_strain: Baculovirus Insect Cell Hi5 Expression_system_vector_type: Bacmid
symmetry	Space Group: P 1	R_factor 0.199 R_Free 0.228
crystal cell	length a length b length c angle alpha angle beta angle gamma 55.986 73.249 91.206 109.38 90.79 91.10
method	X-Ray Diffraction	resolution	1.41 Å
ligand	7OV, MG, ZN	enzyme	Hydrolase E.C.3.1.4.17 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Design and Synthesis of Novel and Selective Phosphodiesterase 2 (PDE2a) Inhibitors for the Treatment of Memory Disorders., Gomez L, Massari ME, Vickers T, Freestone G, Vernier W, Ly K, Xu R, McCarrick M, Marrone T, Metz M, Yan YG, Yoder ZW, Lemus R, Broadbent NJ, Barido R, Warren N, Schmelzer K, Neul D, Lee D, Andersen CB, Sebring K, Aertgeerts K, Zhou X, Tabatabaei A, Peters M, Breitenbucher JG, J Med Chem. 2017 Feb 21. doi: 10.1021/acs.jmedchem.6b01793. PMID:28165743

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (477 Kb) [Save to disk] Biological Unit Coordinates (5u00.pdb1.gz) 120 Kb Biological Unit Coordinates (5u00.pdb2.gz) 120 Kb Biological Unit Coordinates (5u00.pdb3.gz) 120 Kb Biological Unit Coordinates (5u00.pdb4.gz) 119 Kb LPC: Ligand-Protein Contacts for 5U00 CSU: Contacts of Structural Units for 5U00 Structure Factors (4555 Kb) Retrieve 5U00 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5U00 from S2C, [Save to disk] Re-refined 5u00 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 5U00

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5u00_D] [5u00] [5u00_A] [5u00_C] [5u00_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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