5U5H Transcription date Dec 06, 2016
title Crystal Structure Of Eed In Complex With 6-(2-Fluoro-5-Metho 1-Isopropyl-5,6,7,8-Tetrahydroimidazo[1,5-A]Pyridin-3-Amine Fluoro-5-Methoxybenzyl)-1-Isopropyl-5,6,7,8-Tetrahydroimida A]Pyridin-3-Amine
authors D.Bussiere, W.Shu
compound source
Molecule: Polycomb Protein Eed
Chain: A
Fragment: Unp Residues 76-441
Synonym: Heed,Wd Protein Associating With Integrin Cytoplas 1,Wait-1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eed
Expression_system: Escherichia Coli K-12
Expression_system_taxid: 83333
Expression_system_strain: K-12
symmetry Space Group: P 1 21 1
R_factor 0.164 R_Free 0.204
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.570 60.000 66.570 90.00 103.86 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand 7VV, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-Guided Design of EED Binders Allosterically Inhibiting the Epigenetic Polycomb Repressive Complex 2 (PRC2) Methyltransferase., Lingel A, Sendzik M, Huang Y, Shultz MD, Cantwell J, Dillon MP, Fu X, Fuller J, Gabriel T, Gu J, Jiang X, Li L, Liang F, McKenna M, Qi W, Rao W, Sheng X, Shu W, Sutton J, Taft B, Wang L, Zeng J, Zhang H, Zhang M, Zhao K, Lindvall M, Bussiere DE, J Med Chem. 2017 Jan 12;60(1):415-427. doi: 10.1021/acs.jmedchem.6b01473. Epub, 2017 Jan 3. PMID:27992714
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk]
  • Biological Unit Coordinates (5u5h.pdb1.gz) 126 Kb
  • LPC: Ligand-Protein Contacts for 5U5H
  • CSU: Contacts of Structural Units for 5U5H
  • Structure Factors (1173 Kb)
  • Retrieve 5U5H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5U5H from S2C, [Save to disk]
  • Re-refined 5u5h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5U5H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5U5H
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5u5h] [5u5h_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5U5H
  • Community annotation for 5U5H at PDBWiki (http://pdbwiki.org)

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