5UBD		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	MSE	enzyme
Gene	DN30 ; EN12
Primary reference	The replication initiator of the cholera pathogen's second chromosome shows structural similarity to plasmid initiators., Orlova N, Gerding M, Ivashkiv O, Olinares PD, Chait BT, Waldor MK, Jeruzalmi D, Nucleic Acids Res. 2016 Dec 27. pii: gkw1288. doi: 10.1093/nar/gkw1288. PMID:28031373

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk] Biological Unit Coordinates (5ubd.pdb1.gz) 21 Kb Biological Unit Coordinates (5ubd.pdb2.gz) 21 Kb LPC: Ligand-Protein Contacts for 5UBD CSU: Contacts of Structural Units for 5UBD Structure Factors (144 Kb) Retrieve 5UBD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5UBD from S2C, [Save to disk] Re-refined 5ubd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5UBD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ubd_A] [5ubd_B] [5ubd] SWISS-PROT database:

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