5UDZ	Rna Binding Protein Rna	date	Dec 29, 2016
title	Human Lin28a In Complex With Let-7f-1 Microrna Pre-Element
authors	Y.Nam, L.Wang, P.Sliz
compound		source
Molecule: Protein Lin-28 Homolog A Chain: A, B Fragment: Unp Residues 31-187 Synonym: Lin-28a,Zinc Finger Cchc Domain-Containing Protein Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Lin28a, Csdd1, Lin28, Zcchc1 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Let-7f-1 Pre-Element Chain: V, W Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
symmetry	Space Group: P 41	R_factor 0.164 R_Free 0.200
crystal cell	length a length b length c angle alpha angle beta angle gamma 76.429 76.429 105.615 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	ZN	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	LIN28 Zinc Knuckle Domain Is Required and Sufficient to Induce let-7 Oligouridylation., Wang L, Nam Y, Lee AK, Yu C, Roth K, Chen C, Ransey EM, Sliz P, Cell Rep. 2017 Mar 14;18(11):2664-2675. doi: 10.1016/j.celrep.2017.02.044. PMID:28297670

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk] Biological Unit Coordinates (5udz.pdb1.gz) 67 Kb Biological Unit Coordinates (5udz.pdb2.gz) 66 Kb LPC: Ligand-Protein Contacts for 5UDZ CSU: Contacts of Structural Units for 5UDZ Structure Factors (342 Kb) Retrieve 5UDZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5UDZ from S2C, [Save to disk] Re-refined 5udz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5UDZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5UDZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5udz_V] [5udz_B] [5udz_W] [5udz_A] [5udz] SWISS-PROT database: Domain organization of by SWISSPFAM

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