5UGB	Transferase Transferase Inhibitor	date	Jan 07, 2017
title	Crystal Structure Of The Egfr Kinase Domain In Complex With {[(3s)-1-Acetylpyrrolidin-3-Yl]Amino}-9-(Propan-2-Yl)-9h-Pu Yl]Amino}Phenyl)-1-Methylpiperazin-1-Ium
authors	K.S.Gajiwala, R.A.Ferre
compound		source
Molecule: Epidermal Growth Factor Receptor Chain: A Fragment: Unp Residues 695-1022 Synonym: Proto-Oncogene C-Erbb-1,Receptor Tyrosine-Protein Erbb-1; Ec: 2.7.10.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Egfr, Erbb, Erbb1, Her1 Expression_system: Spodoptera Aff. Frugiperda 2 Rz-2014 Expression_system_taxid: 1491790
symmetry	Space Group: I 2 3	R_factor 0.215 R_Free 0.251
crystal cell	length a length b length c angle alpha angle beta angle gamma 146.706 146.706 146.706 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.53 Å
ligand	8BM	enzyme	Transferase E.C.2.7.10.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Discovery of N-((3R,4R)-4-fluoro-1-(6-((3-methoxy-1-methyl-1H-pyrazol-4-yl)amino)-9-methyl-9H- purin-2-yl)pyrrolidine-3-yl)acrylamide (PF-06747775) Through Structure-Based Drug Design; A High Affinity Irreversible Inhibitor Targeting Oncogenic EGFR Mutants With Selectivity Over Wild-Type EGFR., Planken S, Behenna DC, Nair SK, Johnson TO, Nagata A, Almaden C, Bailey S, Ballard TE, Bernier L, Cheng H, Cho-Schultz S, Dalvie D, Deal JG, Dinh DM, Edwards MP, Ferre RA, Gajiwala KS, Hemkens MD, Kania RS, Kath JC, Matthews J, Murray BW, Niessen S, Orr ST, Pairish M, Sach NW, Shen H, Shi M, Solowiej J, Tran K, Tseng E, Vicini P, Wang Y, Weinrich SL, Zhou R, Zientek M, Liu L, Luo Y, Xin S, Zhang C, Lafontaine JA, J Med Chem. 2017 Mar 13. doi: 10.1021/acs.jmedchem.6b01894. PMID:28287730

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk] Biological Unit Coordinates (5ugb.pdb1.gz) 52 Kb LPC: Ligand-Protein Contacts for 5UGB CSU: Contacts of Structural Units for 5UGB Structure Factors (139 Kb) Retrieve 5UGB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5UGB from S2C, [Save to disk] Re-refined 5ugb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5UGB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5UGB

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ugb] [5ugb_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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