5UHF Crystal structure of Mycobacterium tuberculosis transcription initiation complex in complex with D-IX336 date
authors Lin, W., Das, K., Feng, Y., Ebright, R.H.
compound source
symmetry
R_factor
R_Free 0.2670
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 4.34
ligand 88D, MG, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


C


D


E


F
  • bacterial sigma factor activ...


    • Primary referenceStructural Basis of Mycobacterium tuberculosis Transcription and Transcription Inhibition., Lin W, Mandal S, Degen D, Liu Y, Ebright YW, Li S, Feng Y, Zhang Y, Mandal S, Jiang Y, Liu S, Gigliotti M, Talaue M, Connell N, Das K, Arnold E, Ebright RH, Mol Cell. 2017 Apr 20;66(2):169-179.e8. doi: 10.1016/j.molcel.2017.03.001. Epub, 2017 Apr 6. PMID:28392175
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (537 Kb) [Save to disk]
  • Biological Unit Coordinates (5uhf.pdb1.gz) 527 Kb
  • LPC: Ligand-Protein Contacts for 5UHF
  • CSU: Contacts of Structural Units for 5UHF
  • Structure Factors (285 Kb)
  • Retrieve 5UHF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UHF from S2C, [Save to disk]
  • Re-refined 5uhf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5UHF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5UHF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5uhf from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5uhf_F] [5uhf_G] [5uhf_E] [5uhf_D] [5uhf_C] [5uhf] [5uhf_B] [5uhf_A] [5uhf_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5UHF
  • Community annotation for 5UHF at PDBWiki (http://pdbwiki.org)

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