5UHG Crystal structure of Mycobacterium tuberculosis transcription initiation complex in complex with D-AAP1 and Rifampin date
authors Lin, W., Das, K., Feng, Y., Ebright, R.H.
compound source
symmetry
R_factor
R_Free 0.2601
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.97
ligand 88G, MG, RFP, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


C


D


E


F
  • bacterial sigma factor activ...


  • Primary referenceStructural Basis of Mycobacterium tuberculosis Transcription and Transcription Inhibition., Lin W, Mandal S, Degen D, Liu Y, Ebright YW, Li S, Feng Y, Zhang Y, Mandal S, Jiang Y, Liu S, Gigliotti M, Talaue M, Connell N, Das K, Arnold E, Ebright RH, Mol Cell. 2017 Apr 20;66(2):169-179.e8. doi: 10.1016/j.molcel.2017.03.001. Epub, 2017 Apr 6. PMID:28392175
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (541 Kb) [Save to disk]
  • Biological Unit Coordinates (5uhg.pdb1.gz) 531 Kb
  • LPC: Ligand-Protein Contacts for 5UHG
  • CSU: Contacts of Structural Units for 5UHG
  • Structure Factors (289 Kb)
  • Retrieve 5UHG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UHG from S2C, [Save to disk]
  • Re-refined 5uhg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5UHG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UHG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5uhg_H] [5uhg_E] [5uhg_C] [5uhg_A] [5uhg_F] [5uhg_G] [5uhg_B] [5uhg] [5uhg_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UHG
  • Community annotation for 5UHG at PDBWiki (http://pdbwiki.org)

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