5ULG Isomerase Isomerase Inhibitor date Jan 24, 2017
title Crystal Structure Of Rpe65 In Complex With Mb-008 And Palmit
authors P.D.Kiser, K.Palczewski
compound source
Molecule: Retinoid Isomerohydrolase
Chain: A, B
Synonym: All-Trans-Retinyl-Palmitate Hydrolase,Retinal Pigm Epithelium-Specific 65 Kda Protein,Retinol Isomerase;
Ec: 3.1.1.64
 Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
symmetry Space Group: P 65
R_factor 0.176 R_Free 0.207
crystal
cell
length a length b length c angle alpha angle beta angle gamma
175.319 175.319 86.653 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand 8E4, FE2, NA, PG4, PLM enzyme Hydrolase E.C.3.1.1.64 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • all-trans-retinyl-palmitate ...
  • all-trans-retinyl-ester hydr...


    • Primary referenceRational tuning of visual cycle modulator pharmacodynamics., Kiser PD, Zhang J, Badiee M, Kinoshita J, Peachey NS, Tochtrop GP, Palczewski K, J Pharmacol Exp Ther. 2017 May 5. pii: jpet.117.240721. doi:, 10.1124/jpet.117.240721. PMID:28476927
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (185 Kb) [Save to disk]
  • Biological Unit Coordinates (5ulg.pdb1.gz) 179 Kb
  • LPC: Ligand-Protein Contacts for 5ULG
  • CSU: Contacts of Structural Units for 5ULG
  • Structure Factors (557 Kb)
  • Retrieve 5ULG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ULG from S2C, [Save to disk]
  • Re-refined 5ulg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5ULG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5ULG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ulg] [5ulg_A] [5ulg_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5ULG
  • Community annotation for 5ULG at PDBWiki (http://pdbwiki.org)

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