5UOH Hydrolase date Jan 31, 2017
title Crystal Structure Of Hip1 (Rv2224c) T466a Mutant
authors J.L.Naffin-Olivos, A.Daab, A.White, N.Goldfarb, A.C.Milne, D.Liu, J.Baikovitz, B.M.Dunn, J.Rengarajan, G.A.Petsko, D.Ringe
compound source
Molecule: Carboxylesterase A
Chain: A
Fragment: Unp Residues 50-520
Ec: 3.1.1.-
Engineered: Yes
Other_details: N-Terminal 6xhis Tag With Linker And Thrombi Recognition Cleavage Site. Residue Thr466 In Wild-Type Sequ Mutated To An Ala.
 Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 83332
Strain: Atcc 25618 H37rv
Atcc: 25618
Gene: Caea, Rv2224c, Mtcy427.05c
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 31 2 1
R_factor 0.217 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.249 104.249 127.707 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.61 Å
ligand
enzyme Hydrolase E.C.3.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • peptidase activity


    • Primary referenceStructure Determination of Mycobacterium tuberculosis Serine Protease Hip1 (Rv2224c)., Naffin-Olivos JL, Daab A, White A, Goldfarb NE, Milne AC, Liu D, Baikovitz J, Dunn BM, Rengarajan J, Petsko GA, Ringe D, Biochemistry. 2017 Apr 7. doi: 10.1021/acs.biochem.6b01066. PMID:28346784
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (5uoh.pdb1.gz) 71 Kb
  • CSU: Contacts of Structural Units for 5UOH
  • Structure Factors (476 Kb)
  • Retrieve 5UOH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UOH from S2C, [Save to disk]
  • Re-refined 5uoh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5UOH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5UOH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5uoh] [5uoh_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5UOH
  • Community annotation for 5UOH at PDBWiki (http://pdbwiki.org)

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