5UPS date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 8K1, FMT, MSE, NA enzyme
Primary referenceNatural separation of the acyl-CoA ligase reaction results in a non-adenylating enzyme., Wang N, Rudolf JD, Dong LB, Osipiuk J, Hatzos-Skintges C, Endres M, Chang CY, Babnigg G, Joachimiak A, Phillips GN Jr, Shen B, Nat Chem Biol. 2018 Jul;14(7):730-737. doi: 10.1038/s41589-018-0061-0. Epub 2018 , Jun 4. PMID:29867143
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (340 Kb) [Save to disk]
  • Biological Unit Coordinates (5ups.pdb1.gz) 331 Kb
  • LPC: Ligand-Protein Contacts for 5UPS
  • CSU: Contacts of Structural Units for 5UPS
  • Structure Factors (3076 Kb)
  • Retrieve 5UPS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UPS from S2C, [Save to disk]
  • Re-refined 5ups structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5UPS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ups] [5ups_A] [5ups_B]
  • SWISS-PROT database:

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