5URC Oxygen Transport date Feb 10, 2017
title Design, Synthesis, Functional And Biological Evaluation Of E Ester Derivatives Of The Antisickling Agent 5-Hmf For The T Of Sickle Cell Disease
authors P.P.Pagare, R.S.Safo, A.Gazi
compound source
Molecule: Hemoglobin Subunit Alpha
Chain: A, C
Synonym: Alpha-Globin,Hemoglobin Alpha Chain
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Hemoglobin Subunit Beta
Chain: B, D
Synonym: Beta-Globin,Hemoglobin Beta Chain
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.179 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.642 83.328 104.954 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand 8MV, CMO, FUX, HEM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C
  • peroxidase activity


    • D, B
  • peroxidase activity


    • Primary referenceDesign, Synthesis, and Biological Evaluation of Ester and Ether Derivatives of Antisickling Agent 5-HMF for the Treatment of Sickle Cell Disease., Xu GG, Pagare PP, Ghatge MS, Safo RP, Gazi A, Chen Q, David T, Alabbas AB, Musayev FN, Venitz J, Zhang Y, Safo MK, Abdulmalik O, Mol Pharm. 2017 Oct 2;14(10):3499-3511. doi: 10.1021/acs.molpharmaceut.7b00553., Epub 2017 Sep 13. PMID:28858508
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (5urc.pdb1.gz) 115 Kb
  • LPC: Ligand-Protein Contacts for 5URC
  • CSU: Contacts of Structural Units for 5URC
  • Structure Factors (2427 Kb)
  • Retrieve 5URC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5URC from S2C, [Save to disk]
  • Re-refined 5urc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5URC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5URC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5urc_B] [5urc] [5urc_C] [5urc_D] [5urc_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5URC
  • Community annotation for 5URC at PDBWiki (http://pdbwiki.org)

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