5UWN Hydrolase Hydrolase Inhibitor date Feb 21, 2017
title Matrix Metalloproteinase-13 Complexed With Selective Inhibit Compound 10d
authors A.B.Taylor, X.Cao, P.J.Hart
compound source
Molecule: Collagenase 3
Chain: A, B, C, D, E
Synonym: Matrix Metalloproteinase-13,Mmp-13
Ec: 3.4.24.-
Engineered: Yes
Other_details: Catalytic Domain (Unp Residues 104-274)
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mmp13
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pak8h
symmetry Space Group: I 41 2 2
R_factor 0.195 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
131.727 131.727 418.722 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand 8O7, CA, SO4, ZN enzyme Hydrolase E.C.3.4.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (5uwn.pdb1.gz) 30 Kb
  • Biological Unit Coordinates (5uwn.pdb2.gz) 31 Kb
  • Biological Unit Coordinates (5uwn.pdb3.gz) 31 Kb
  • Biological Unit Coordinates (5uwn.pdb4.gz) 31 Kb
  • Biological Unit Coordinates (5uwn.pdb5.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 5UWN
  • CSU: Contacts of Structural Units for 5UWN
  • Structure Factors (312 Kb)
  • Retrieve 5UWN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UWN from S2C, [Save to disk]
  • Re-refined 5uwn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5UWN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UWN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5uwn_D] [5uwn_E] [5uwn_A] [5uwn_C] [5uwn_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UWN
  • Community annotation for 5UWN at PDBWiki (http://pdbwiki.org)

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