5V7K Dna Binding Protein date Mar 20, 2017
title Pcna Mutant D41ad42a Protein Defective In Gene Silencing
authors C.M.Kondratick, J.M.Litman, M.T.Washington, L.M.Dieckman
compound source
Molecule: Proliferating Cell Nuclear Antigen
Chain: A
Synonym: Pcna
Engineered: Yes
Mutation: Yes
 Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Pol30, Ybr088c, Ybr0811
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 3
R_factor 0.184 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
122.323 122.323 122.323 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.05 Å
Gene
Ontology
ChainFunctionProcessComponent
A
  • chromatin silencing at telom...

    • Primary referenceCrystal structures of PCNA mutant proteins defective in gene silencing suggest a novel interaction site on the front face of the PCNA ring., Kondratick CM, Litman JM, Shaffer KV, Washington MT, Dieckman LM, PLoS One. 2018 Mar 2;13(3):e0193333. doi: 10.1371/journal.pone.0193333., eCollection 2018. PMID:29499038
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (5v7k.pdb1.gz) 232 Kb
  • CSU: Contacts of Structural Units for 5V7K
  • Structure Factors (552 Kb)
  • Retrieve 5V7K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5V7K from S2C, [Save to disk]
    • View 5V7K in 3D
  • Proteopedia, because life has more than 2D.
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    • Visual 3D analysis of 5V7K
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5v7k_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5V7K
  • Community annotation for 5V7K at PDBWiki (http://pdbwiki.org)

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