5VB7 Transcription date Mar 28, 2017
title X-Ray Co-Structure Of Nuclear Receptor Ror-Gammat Ligand Bin Domain With An Agonist And Src2 Peptide
authors X.Li
compound source
Molecule: Nuclear Receptor Ror-Gamma, Src2 Chimera
Chain: A
Fragment: Residues 260-507
Synonym: Nuclear Receptor Rzr-Gamma,Nuclear Receptor Subfam Group F Member 3,Rar-Related Orphan Receptor C,Retinoid-Rel Orphan Receptor-Gamma;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rorc, Nr1f3, Rorg, Rzrg
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 41 21 2
R_factor 0.184 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.959 62.959 155.322 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.34 Å
ligand 921, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (5vb7.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 5VB7
  • CSU: Contacts of Structural Units for 5VB7
  • Structure Factors (221 Kb)
  • Retrieve 5VB7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VB7 from S2C, [Save to disk]
  • Re-refined 5vb7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5VB7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5VB7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vb7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5VB7
  • Community annotation for 5VB7 at PDBWiki (http://pdbwiki.org)

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