5VB9 Immune System Inhibitor date Mar 28, 2017
title Il-17a In Complex With Peptide
authors S.Antonysamy, M.Russell, A.Zhang, C.Groshong, D.Manglicmot, F.Lu, S.R.Wasserman, F.Zhang, S.Afshar, H.Bina, H.Broughton, M.Chalmer J.Dodge, A.Espada, S.Jones, J.P.Ting, M.Woodman
compound source
Molecule: Interleukin-17a
Chain: A, B
Fragment: Unp Residues 38-155
Synonym: Il-17a,Cytotoxic T-Lymphocyte-Associated Antigen 8
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Il17a, Ctla8, Il17
Expression_system: Baculovirus Expression Vector Pfastbac1-
Expression_system_taxid: 274590

Molecule: Peptide Inhibitor
Chain: C, D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 21 2
R_factor 0.182 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.771 55.122 143.953 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand CL, EDO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceUtilization of peptide phage display to investigate hotspots on IL-17A and what it means for drug discovery., Ting JP, Tung F, Antonysamy S, Wasserman S, Jones SB, Zhang FF, Espada A, Broughton H, Chalmers MJ, Woodman ME, Bina HA, Dodge JA, Benach J, Zhang A, Groshong C, Manglicmot D, Russell M, Afshar S, PLoS One. 2018 Jan 12;13(1):e0190850. doi: 10.1371/journal.pone.0190850., eCollection 2018. PMID:29329326
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (5vb9.pdb1.gz) 94 Kb
  • Biological Unit Coordinates (5vb9.pdb2.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 5VB9
  • CSU: Contacts of Structural Units for 5VB9
  • Structure Factors (303 Kb)
  • Retrieve 5VB9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VB9 from S2C, [Save to disk]
  • View 5VB9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5VB9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vb9_B] [5vb9_D] [5vb9_C] [5vb9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5VB9
  • Community annotation for 5VB9 at PDBWiki (http://pdbwiki.org)

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