5VDC date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand EDO, GOL, ZN enzyme
Primary referenceHistone-binding of DPF2 mediates its repressive role in myeloid differentiation., Huber FM, Greenblatt SM, Davenport AM, Martinez C, Xu Y, Vu LP, Nimer SD, Hoelz A, Proc Natl Acad Sci U S A. 2017 Jun 6;114(23):6016-6021. doi:, 10.1073/pnas.1700328114. Epub 2017 May 22. PMID:28533407
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (5vdc.pdb1.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 5VDC
  • CSU: Contacts of Structural Units for 5VDC
  • Structure Factors (166 Kb)
  • Retrieve 5VDC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VDC from S2C, [Save to disk]
  • Re-refined 5vdc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5VDC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vdc] [5vdc_A]
  • SWISS-PROT database:

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