5VDT date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 4BW, ZN enzyme
Primary referenceThe catalytic mechanism of cyclic gmp-amp synthase (cGAS) and implications for innate immunity and inhibition., Hall J, Ralph EC, Shanker S, Wang H, Byrnes LJ, Horst R, Wong J, Brault A, Dumlao D, Smith JF, Dakin LA, Schmitt DC, Trujillo J, Vincent F, Griffor M, Aulabaugh AE, Protein Sci. 2017 Sep 22. doi: 10.1002/pro.3304. PMID:28940468
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (247 Kb) [Save to disk]
  • Biological Unit Coordinates (5vdt.pdb1.gz) 124 Kb
  • Biological Unit Coordinates (5vdt.pdb2.gz) 120 Kb
  • LPC: Ligand-Protein Contacts for 5VDT
  • CSU: Contacts of Structural Units for 5VDT
  • Structure Factors (440 Kb)
  • Retrieve 5VDT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VDT from S2C, [Save to disk]
    • View 5VDT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vdt_A] [5vdt_B]
  • SWISS-PROT database:

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